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rubrum reference genome  (ATCC)


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    ATCC rubrum reference genome
    Rubrum Reference Genome, supplied by ATCC, used in various techniques. Bioz Stars score: 92/100, based on 18 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/rubrum reference genome/product/ATCC
    Average 92 stars, based on 18 article reviews
    rubrum reference genome - by Bioz Stars, 2026-03
    92/100 stars

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    A) Pairwise average nucleotide identity (ANI) and B) nucleotide diversity (π) of A. rubrum genomes within pre-exposed (red) and naïve (blue) communities after one week (Sample 3) and eight weeks (Sample 4) of severe acidification. Number of scaffolds are in parentheses. Asterisks indicate statistical significance based on Holm-Bonferroni adjusted P -values from Dunn’s test (*: P < 0.05, **: P < 0.01, ***: P < 0.001).

    Journal: bioRxiv

    Article Title: Pre-exposure to stress reduces loss of community and genetic diversity following severe environmental disturbance

    doi: 10.1101/2024.10.11.617827

    Figure Lengend Snippet: A) Pairwise average nucleotide identity (ANI) and B) nucleotide diversity (π) of A. rubrum genomes within pre-exposed (red) and naïve (blue) communities after one week (Sample 3) and eight weeks (Sample 4) of severe acidification. Number of scaffolds are in parentheses. Asterisks indicate statistical significance based on Holm-Bonferroni adjusted P -values from Dunn’s test (*: P < 0.05, **: P < 0.01, ***: P < 0.001).

    Article Snippet: To characterize the impact of pre-exposure on the genetic diversity within A. rubrum , we mapped reads to the A. rubrum reference genome (NCBI RefSeq assembly GCF_900156265.1, strain ATCC 35905) to call single nucleotide polymorphisms (SNPs) for population genetic analyses.

    Techniques: